Difficult Passages

Some biblical commands and permissions attributed to God raise serious moral questions for modern readers.

8 min readUpdated

The Bible describes many things it does not endorse. This page covers passages where the text says that God does something, or commands something, that would be condemned in any other context.

In each case the action is attributed to God directly, usually in the first person. All have standard explanations, given below.

The passages

Causation

Citation Verse
Exodus 4:11 "Who makes him mute, or deaf, or seeing, or blind? Is it not I, the LORD?"
Isaiah 45:7 "I form light and create darkness, I make well-being and create calamity"
Amos 3:6 "Does disaster come to a city, unless the LORD has done it?"
Lamentations 3:38 "Is it not from the mouth of the Most High that good and bad come?"

The word rendered "calamity" in Isaiah is ra, the ordinary Hebrew word for bad or evil — the same word in the tree of the knowledge of good and ra.

Deception

Citation Verse
1 Kings 22:19-23 God in his council authorizes a spirit: "I will go out, and will be a lying spirit in the mouth of all his prophets"
2 Thessalonians 2:11-12 "God sends them a strong delusion, so that they may believe what is false, in order that all may be condemned"
Ezekiel 14:9 "If the prophet is deceived... I, the LORD, have deceived that prophet"
Jeremiah 20:7 "O LORD, you have deceived me, and I was deceived"

Laws described as not good

Citation Verse
Ezekiel 20:25-26 "I gave them statutes that were not good... I defiled them through their very gifts in their offering up all their firstborn, that I might devastate them"

This sits directly against Jeremiah 7:31, where child sacrifice is something God "did not command, nor did it come into my mind."

People made for destruction

Citation Verse
Romans 9:21-23 "Has the potter no right over the clay... vessels of wrath prepared for destruction"
Proverbs 16:4 "The LORD has made everything for its purpose, even the wicked for the day of trouble"

Commands to destroy whole peoples

Citation Verse
1 Samuel 15:3 "Kill both man and woman, child and infant, ox and sheep, camel and donkey"
Deuteronomy 20:16-17 "You shall save alive nothing that breathes"
Numbers 31:17-18 Kill the male children and non-virgin women; keep the virgin girls
Joshua 10:40 "He left no survivors. He totally destroyed all who breathed"

Both of the first two specify non-combatants, and the Amalekite command names infants explicitly.

For reference, the standard definitions of genocide: Oxford — "the deliberate killing of a large number of people from a particular nation or ethnic group with the aim of destroying that nation or group"; the UN Convention — "acts committed with intent to destroy, in whole or in part, a national, ethnical, racial or religious group."

Cannibalism as punishment

Citation Verse
Leviticus 26:29 "You shall eat the flesh of your sons, and you shall eat the flesh of your daughters"
Jeremiah 19:9 "I will make them eat the flesh of their sons and their daughters"
Deuteronomy 28:53 In the siege, "you shall eat the fruit of your womb"

Common objections

"Hebrew attributes everything to God without distinguishing what he wills from what he permits"

Correct as a description of the idiom. Ancient Hebrew has no developed vocabulary for secondary causation, and statements that God does something often mean that it occurred within his sovereignty rather than by his direct action.

This is the best explanation for the causation passages, and it applies to Amos 3:6 and Lamentations 3:38 straightforwardly.

Two consequences follow. The same verses cannot then be cited as strong statements of divine sovereignty while being read weakly here. And Exodus 4:11 still contradicts the common pastoral position that disability results from a fallen world rather than from God — the verse asks who makes people blind and answers directly.

"'Ra' in Isaiah 45:7 means disaster, not moral evil"

Correct. Ra has a wide semantic range, and the parallel with shalom — well-being — favors "calamity" in the sense of catastrophe. Most modern translations render it that way, and the older "I create evil" of the King James is misleading.

The translation removes one difficulty and leaves another. The verse still claims authorship of catastrophe as deliberately as it claims authorship of light, and the point of the sentence is that both come from the same source.

"These are cases of judicial hardening — God confirms a direction already chosen"

This reading fits the text. 2 Thessalonians 2:10 places the refusal to love the truth before the delusion is sent, matching the pattern in Romans 1:24-28 where God "gave them up" to what they had already chosen.

Read this way the passages are coherent, and the same reading is the best available for Ezekiel 20.

The stated purpose remains a difficulty. The text does not say God withdrew and error followed; it says he sent the delusion in order that they be condemned. Where unbelief is partly caused, the justice of punishing it is not obvious. This connects to Election & Free Will.

"Romans 9 is about national election, not individual salvation"

A serious reading with real scholarly support. Paul's subject through chapters 9–11 is the standing of Israel and the inclusion of the Gentiles, not a doctrine of who is individually saved.

The difficulty is the answer Paul gives. He raises the objection himself — "why does he still find fault? For who can resist his will?" — and does not reply that the objector has misunderstood the scope. He replies that the clay has no standing to question the potter.

Whatever the subject, the principle invoked is authority rather than justice.

"The conquest commands are ancient Near Eastern military hyperbole"

The most substantial defense, argued at length by Paul Copan in Is God a Moral Monster? (2011). Conquest accounts in the period routinely claimed total annihilation as a formulaic boast — the Moabite Mesha Stele uses the same herem vocabulary — and the biblical books themselves describe the supposedly destroyed peoples as still present shortly afterward.

The evidence for this is genuine, and it is reinforced by the archaeology in Conquest of Canaan, which indicates the campaigns did not occur as described.

It resolves the historical question by concluding that the text does not report events accurately. The moral question is unaffected: the text presents God as issuing the command, and readers have understood it as issued for most of its history.

"The Canaanites were exceptionally wicked and were being judged"

The text does offer this justification — Leviticus 18:24-25 and Deuteronomy 9:4-5 describe the inhabitants as being driven out for their practices, including child sacrifice.

The argument addresses adults. It does not address the explicit inclusion of infants in 1 Samuel 15:3 or the instruction in Numbers 31 to keep virgin girls after killing the rest.

The charge of child sacrifice also sits awkwardly beside Ezekiel 20:25-26.

"The siege curses describe realistic consequences, not divine action"

Historically accurate — famine cannibalism during siege is attested outside the Bible, including by Josephus during the siege of Jerusalem.

The grammar is the difficulty. Leviticus 26:29 predicts the outcome; Jeremiah 19:9 has God in the first person: "I will make them." Children's suffering is presented as the instrument of punishment for their parents' conduct.

"Judging ancient texts by modern moral standards is anachronistic"

A reasonable caution. Moral judgments across three thousand years of cultural distance can go wrong, and reading ancient law codes as though they were written yesterday produces errors.

It has more force against some passages than others. It works reasonably for the war provisions, which reflect universal ancient practice.

It works less well against the specific claim being examined, which is not that these texts are unusual for their time but that they are presented as the timeless revelation of a perfectly good God. Cultural distance explains a human document well and a timeless one less well.

What the passages show

Every passage above has a defense, and several are good. The hyperbole argument has real scholarship behind it. The judicial hardening reading is coherent. The semantic range of ra does favor "calamity."

The difficulty is that the defenses have no common principle. Each passage requires a different move — that the text is idiomatic, or figurative, or historically inaccurate, or means close to the opposite of what it says. Applied consistently across the rest of scripture, several of those moves would dissolve passages that are relied on as straightforward.

A simpler explanation covers the whole set: these texts were written by people in the ancient Near East whose picture of God included calamity, deception, and conquest, because that is how the gods of that world were understood to act. On that reading the passages are not puzzles but evidence about their authors.

That conclusion is about what best explains the texts, not about whether God exists. Related material is in Biblical Slavery and Conquest of Canaan.